Retinal Proteins

Underconstruction

Retinal Proteins (microbial)

Abbreviations
reso: resolution (from PDB)
EM: electron microscopy
bcl: bicelle
FA: facial amphiphile
xfel: x-ray free electron laser

receptorPDB7TMresoligandremarks
bacteriorhodopsin2BRD170 (A)---all-trans-retinalH.salinarum, EM
1BRR170 (A)2.90all-trans-retinalH.salinarum
170 (B)2.90all-trans-retinalH.salinarum
170 (C)2.90all-trans-retinalH.salinarum
2AT9170 (A)3.00all-trans-retinalH.salinarum, EM
1QHJ170 (A)1.90all-trans-retinalH.salinarum
1C8R*** (A)2.00all-trans-retinalH.salinarum, D96N
1C8S*** (A)2.0013-cis-retinalH.salinarum, D96N, +light
1QKO170 (A)2.1013-cis-retinalH.salinarum, +light
1QKP170 (A)2.10all-trans-retinalH.salinarum
1CWQ170 (A)2.25all-trans-retinalH.salinarum
170 (B)2.25retinalH.salinarum, +light
1E0P170 (A)2.10retinalH.salinarum, +light
1F4Z*** (A)1.8013-cis-retinalH.salinarum, E204Q, +light
1F50*** (A)1.80all-trans-retinalH.salinarum, E204Q
1FBB170 (A)---all-trans-retinalH.salinarum, EM
1FBK170 (A)---all-trans-retinalH.salinarum, EM, triple mutant
1JV6170 (A)2.00all-trans-retinalH.salinarum, D85S/F219L
1JV7170 (A)2.25all-trans-retinalH.salinarum, D85S
1KG8*** (A)2.0013-cis-retinalH.salinarum, +light
1KG9*** (A)1.81all-trans-retinalH.salinarum, +light
1KGB*** (A)1.65all-trans-retinalH.salinarum
1IW6170 (A)2.30all-trans-retinalH.salinarum
1IXF170 (A)2.6013-cis-retinalH.salinarum, +light
1KME170 (A)2.00all-trans-retinalH.salinarum
170 (B)2.00all-trans-retinalH.salinarum
1M0K*** (A)1.43all-trans-retinalH.salinarum, +light
1M0L*** (A)1.47all-trans-retinalH.salinarum
1M0M*** (A)1.43retinalH.salinarum, +light
1O0A*** (A)1.6213-cis-retinalH.salinarum, +light
1MGY170 (A)2.00all-trans-retinalH.salinarum, D85S, +Br
1P8H*** (A)1.5213-cis-retinalH.salinarum, +light
1P8I*** (A)1.86all-trans-retinalH.salinarum, F219L
1P8U*** (A)1.6213-cis-retinalH.salinarum, V49A, +light
1DZE170 (A)2.50all-trans-retinalH.salinarum, +light
1IW9170 (A)2.5013-cis-retinalH.salinarum, +light
1PY6170 (A)1.80all-trans-retinalH.salinarum,bcl
170 (B)1.80all-trans-retinalH.salinarum,bcl
1Q5I170 (A)2.30all-trans-retinalH.salinarum,P186A,bcl
170 (B)2.30all-trans-retinalH.salinarum,P186A,bcl
1Q5J170 (A)2.10all-trans-retinalH.salinarum,P91A,bcl
170 (B)2.10all-trans-retinalH.salinarum,P91A,bcl
1S51170 (A)2.00all-trans-retinalH.salinarum,T24S,bcl
170 (B)2.00all-trans-retinalH.salinarum,T24S,bcl
1S52170 (A)2.30all-trans-retinalH.salinarum,T24V,bcl
170 (B)2.30all-trans-retinalH.salinarum,T24V,bcl
1S53170 (A)2.00all-trans-retinalH.salinarum,T46S,bcl
170 (B)2.00all-trans-retinalH.salinarum,T46S,bcl
1S54170 (A)2.20all-trans-retinalH.salinarum,T24A,bcl
170 (B)2.20all-trans-retinalH.salinarum,T24A,bcl
1VJM170 (A)2.30retinalH.salinarum,+-light
1S8J170 (A)2.30all-trans-retinalH.salinarum,D85S,+nitrate
1S8L170 (A)2.30all-trans-retinalH.salinarum,D85S,+halide
1TN0170 (A)2.50all-trans-retinalH.salinarum,A51P,bcl
170 (B)2.50all-trans-retinalH.salinarum,A51P,bcl
1TN5170 (A)2.20all-trans-retinalH.salinarum,K41P,bcl
170 (B)2.20all-trans-retinalH.salinarum,K41P,bcl
1XJI170 (A)2.20all-trans-retinalH.salinarum,bcl
1X0I170 (A)2.30all-trans-retinalH.salinarum, acid blue
1X0K170 (A)2.60all-trans-retinalH.salinarum, alkaline purple
1X0S170 (A)2.5013-cis-retinalH.salinarum
2I1X*** (A)2.00all-trans-retinalH.salinarum,D96A
2I20*** (A)2.0813-cis-retinalH.salinarum,D96A,+light
2I21*** (A)1.84all-trans-retinalH.salinarum,T46V
2NTU*** (A)1.53all-trans-retinalH.salinarum
2NTW*** (A)1.5313-cis-retinalH.salinarum,+light
3COC170 (A)2.31all-trans-retinalH.salinarum,D115A,bcl
170 (B)2.31all-trans-retinalH.salinarum,D115A,bcl
3COD170 (A)2.70all-trans-retinalH.salinarum,T90A/D115A,bcl
170 (B)2.70all-trans-retinalH.salinarum,T90A/D115A,bcl
2ZFE170 (A)2.50all-trans-retinalH.salinarum, +Xe
3HAN170 (A)2.75all-trans-retinalH.salinarum,V49A,bcl
3HAO170 (A)2.49all-trans-retinalH.salinarum,L94A,bcl
170 (B)2.49all-trans-retinalH.salinarum,L94A,bcl
3HAP170 (A)1.60all-trans-retinalH.salinarum,L111A,bcl
3HAQ170 (A)2.30all-trans-retinalH.salinarum,I148A,bcl
3HAR170 (A)1.70all-trans-retinalH.salinarum,I148V,bcl
3HAS170 (A)1.90all-trans-retinalH.salinarum,L152A,bcl
2ZZL170 (A)2.0313-cis-retinalH.salinarum,+light
2WJK*** (A)2.30all-trans-retinalH.salinarum,E204D
2WJL*** (A)2.15all-trans-retinalH.salinarum,E194D
3MBV*** (A)2.00all-trans-retinalH.salinarum,beta-XylOC(16+4)
3NS0*** (A)1.78all-trans-retinalH.salinarum
3NSB*** (A)1.78retinalH.salinarum, +X-ray effect
3T45170 (A)3.00all-trans-retinalH.salinarum,A215T
170 (B)3.00all-trans-retinalH.salinarum,A215T
170 (C)3.00all-trans-retinalH.salinarum,A215T
3UTV170 (A)2.06all-trans-retinalH.salinarum,Y57F,bcl
3UTW170 (A)2.40all-trans-retinalH.salinarum,P50A/Y57F,bcl
3UTX170 (A)2.47all-trans-retinalH.salinarum,T46A,bcl
170 (B)2.47all-trans-retinalH.salinarum,T46A,bcl
3UTY170 (A)2.37all-trans-retinalH.salinarum,P50A/T46A,bcl
170 (B)2.37all-trans-retinalH.salinarum,P50A/T46A,bcl
3VHZ170 (A)2.30all-trans-retinalH.salinarum,L93A
3VI0170 (A)2.3013-cis-retinalH.salinarum,L93A,+light
4FPD170 (A)2.65retinalH.salinarum,triple mutant
4HWL170 (A)2.00all-trans-retinalH.salinarum, FA-7
170 (B)2.00all-trans-retinalH.salinarum, FA-7
4HYX170 (A)1.99all-trans-retinalH.salinarum, FA-4
170 (B)1.99all-trans-retinalH.salinarum, FA-4
4MD1*** (A)1.73all-trans-retinalH.salinarum, orange form
4MD2*** (A)1.73all-trans-retinalH.salinarum
4OV0*** (A)2.00all-trans-retinalH.salinarum,Amphipol A8-35
4X31170 (A)2.40all-trans-retinalH.salinarum, xfel
4X32*** (A)1.90all-trans-retinalH.salinarum
4XXJ170 (A)1.90all-trans-retinalH.salinarum, e.coli expressed
*** (B)1.90all-trans-retinalH.salinarum, e.coli expressed
170 (C)1.90all-trans-retinalH.salinarum, e.coli expressed
5A44*** (A)2.29all-trans-retinalH.salinarum,multi-20microncrystals
5A45*** (A)2.57all-trans-retinalH.salinarum,multi-5microncrystals
5J7A*** (A)2.30all-trans-retinalH.salinarum,xfel
halorhodopsin1E12170 (A)1.80all-trans-retinalH.salinarum
2JAF170 (A)1.70all-trans-retinalH.salinarum, T203V
2JAG170 (A)1.9313-cis-retinalH.salinarum,T203V,+light
3A7K170 (A)2.00all-trans-retinalN.pharaonis
170 (B)2.00all-trans-retinalN.pharaonis
170 (D)2.00all-trans-retinalN.pharaonis
3ABW170 (A)1.90all-trans-retinalN.pharaonis, +azide
170 (B)1.90all-trans-retinalN.pharaonis, +azide
170 (D)1.90all-trans-retinalN.pharaonis, +azide
3QBG170 (A)1.80all-trans-retinalN.pharaonis, blue form
170 (B)1.80all-trans-retinalN.pharaonis, blue form
170 (D)1.80all-trans-retinalN.pharaonis, blue form
3QBI170 (A)2.10all-trans-retinalN.pharaonis, yellow form
170 (B)2.10all-trans-retinalN.pharaonis, yellow form
170 (D)2.10all-trans-retinalN.pharaonis, yellow form
3QBK170 (A)2.20all-trans-retinalN.pharaonis, +Br
170 (B)2.20all-trans-retinalN.pharaonis, +Br
170 (D)2.20all-trans-retinalN.pharaonis, +Br
3QBL170 (A)2.20all-trans-retinalN.pharaonis, +nitrate
170 (B)2.20all-trans-retinalN.pharaonis, +nitrate
170 (D)2.20all-trans-retinalN.pharaonis, +nitrate
5AHY170 (A)2.15all-trans-retinalH.salinarum
5AHZ170 (A)2.45all-trans-retinalH.salinarum,+Br
4QRY170 (A)2.20all-trans-retinalN.pharaonis,+Br
170 (B)2.2013-cis-retinalN.pharaonis,+Br
170 (C)2.2013-cis-retinalN.pharaonis,+Br
170 (E)2.20all-trans-retinalN.pharaonis,+Br
170 (F)2.20all-trans-retinalN.pharaonis,+Br
170 (G)2.20all-trans-retinalN.pharaonis,+Br
5G36170 (A)2.60all-trans-retinalH.salinarum,yellow form
sensory rhodopsin II1JGJ170 (A)2.40all-trans-retinalN.pharaonis
1H68170 (A)2.10all-trans-retinalN.pharaonis
1H2S170 (A)1.93all-trans-retinalN.pharaonis,+HtrII
2F93170 (1)2.00all-trans-retinalN.pharaonis,+HtrII
170 (2)2.0013-cis-retinalN.pharaonis,K state,+HtrII
3QAP170 (A)1.90all-trans-retinalN.pharaonis
Anabaena sensory rhodopsin1XIO170 (A)2.00all-trans-retinalNostoc sp. PCC 7120
Archaerhodopsin-11UAZ170 (A)3.40all-trans-retinalH.chaoviator
170 (B)3.40all-trans-retinalH.chaoviator
Archaerhodopsin-21VGO*** (A)2.50all-trans-retinalH. sp. aus-2, C2221
*** (B)2.50all-trans-retinalH. sp. aus-2, C2221
2EI4170 (A)2.10all-trans-retinalH. sp. aus-2, P321
2Z55*** (A)2.50all-trans-retinalH. sp. aus-2, P63
*** (B)2.50all-trans-retinalH. sp. aus-2, P63
*** (D)2.50all-trans-retinalH. sp. aus-2, P63
*** (E)2.50all-trans-retinalH. sp. aus-2, P63
3WQJ170 (A)1.80all-trans-retinalH. sp. aus-2, H32
Xanthorhodopsin3DDL170 (A)1.90all-trans-retinalSalinibacter ruber
*** (B)1.90all-trans-retinalSalinibacter ruber
thermophilic rhodopsin5AZD170 (A)2.80all-trans-retinalT. thermophilus
170 (B)2.80all-trans-retinalT. thermophilus
170 (C)2.80all-trans-retinalT. thermophilus
170 (D)2.80all-trans-retinalT. thermophilus
Acetabularia Rhodopsin II3AM6170 (A)3.20all-trans-retinalA. acetabulum
*** (B)3.20all-trans-retinalA. acetabulum
*** (C)3.20all-trans-retinalA. acetabulum
*** (D)3.20all-trans-retinalA. acetabulum
Acetabularia Rhodopsin I5AWZ170 (A)1.57all-trans-retinalA. acetabulum
5AX0170 (A)1.52all-trans-retinalA. acetabulum
5AX1170 (A)1.80all-trans-retinalA. acetabulum
Proteorhodopsin (green)4HYJ170 (A)2.30all-trans-retinalE.sibiricum
*** (B)2.30all-trans-retinalE.sibiricum
Proteorhodopsin (blue)4JQ6*** (A)2.31all-trans-retinalMed12
*** (B)2.31all-trans-retinalMed12
*** (C)2.31all-trans-retinalMed12
4KLY*** (A)2.70all-trans-retinalHOT75, D97N
*** (B)2.70all-trans-retinalHOT75, D97N
170 (C)2.70all-trans-retinalHOT75, D97N
*** (D)2.70all-trans-retinalHOT75, D97N
*** (E)2.70all-trans-retinalHOT75, D97N
4KNF170 (A)2.60all-trans-retinalHOT75, D97N/Q105L
170 (B)2.60all-trans-retinalHOT75, D97N/Q105L
170 (C)2.60all-trans-retinalHOT75, D97N/Q105L
170 (D)2.60all-trans-retinalHOT75, D97N/Q105L
170 (E)2.60all-trans-retinalHOT75, D97N/Q105L
Deltarhodopsin-34FBZ170 (A)2.70all-trans-retinalH.thermotolerans
Cruxrhodopsin-34JR8170 (A)2.30all-trans-retinalH.vallismortis, pH 6
4L35170 (A)2.10all-trans-retinalH.vallismortis, pH 5
Bacteriorhodopsin I4PXK170 (A)2.50all-trans-retinalH.marismortui, D94N
channelrhodopsin (chimeric)3UG9*** (A)2.30all-trans-retinalC.reinhardtii
4YZI*** (A)2.50all-trans-retinalC.reinhardtii,T198G/G202A
Na pumping rhodopsin3X3B170 (A)2.30all-trans-retinalD. eikasta, acidic
3X3C170 (A)2.30all-trans-retinalD. eikasta, neutral
4XTL170 (A)1.45all-trans-retinalD. eikasta, pH4.3
4XTN170 (A)2.20all-trans-retinalD. eikasta, pH4.9
170 (B)2.20all-trans-retinalD. eikasta, pH4.9
170 (C)2.20all-trans-retinalD. eikasta, pH4.9
170 (D)2.20all-trans-retinalD. eikasta, pH4.9
170 (E)2.20all-trans-retinalD. eikasta, pH4.9
170 (F)2.20all-trans-retinalD. eikasta, pH4.9
170 (G)2.20all-trans-retinalD. eikasta, pH4.9
170 (H)2.20all-trans-retinalD. eikasta, pH4.9
170 (I)2.20all-trans-retinalD. eikasta, pH4.9
170 (J)2.20all-trans-retinalD. eikasta, pH4.9
4XTO170 (A)2.80all-trans-retinalD. eikasta, pH5.6
170 (B)2.80all-trans-retinalD. eikasta, pH5.6
170 (C)2.80all-trans-retinalD. eikasta, pH5.6
170 (D)2.80all-trans-retinalD. eikasta, pH5.6
170 (E)2.80all-trans-retinalD. eikasta, pH5.6